1QWA

NMR structure of 5'-r(GGAUGCCUCCCGAGUGCAUCC): an RNA hairpin derived from the mouse 5'ETS that binds nucleolin RBD12.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1-1.5mM B2 NA, in 5mM potassium phosphate buffer, 50uM EDTA, 0.02% NaN3 95% H2O, 5% D2O95% H2O/5% D2O5mM potassium phosphate7ambient278
22D NOESY1-1.5mM B2 NA, in 5mM potassium phosphate buffer, 50uM EDTA, 0.02% NaN399.999% D2O5mM potassium phosphate7ambient298
32D TOCSY1-1.5mM B2 NA, in 5mM potassium phosphate buffer, 50uM EDTA, 0.02% NaN399.999% D2O5mM potassium phosphate7ambient298
4DQF-COSY1-1.5mM B2 NA, in 5mM potassium phosphate buffer, 50uM EDTA, 0.02% NaN399.999% D2O5mM potassium phosphate7ambient298
51H-13C HSQC or HMQC1mM B2 U 15N/13C, in 5mM potassium phosphate buffer, 50uM EDTa, 0.02% NaN399.999% D2O5mM potassium phosphate7ambient298
61H-15N HMQC1mM B2 U 15N/13C, in 5mM potassium phosphate buffer, 50uM EDTa, 0.02% NaN3, 95% H2O, 5% D2O95% H2O/5% D2O5mM potassium phosphate7ambient278
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX500
2BrukerDMX600
NMR Refinement
MethodDetailsSoftware
simulated annealingXwinNMR
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted,back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number17
Conformers Submitted Total Number17
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsAssignment methodology for this molecule is described in J. Biomol. NMR 9, 259-272 (1997) and Prog. in Nuc. Magn. Resonan. Spec. 32, 287-387 (1998).
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.6Bruker
2data analysisAURELIA3.108Bruker
3structure solutionX-PLORNIHBrunger
4refinementX-PLORNIHBrunger