1QQ3

THE SOLUTION STRUCTURE OF THE HEME BINDING VARIANT ARG98CYS OF OXIDIZED ESCHERICHIA COLI CYTOCHROME B562


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY3MM R98C CYTOCHROME B562; 500MM PHOSPHATE BUFFER; 90% H2O, 10% D2O500mM PHOSPHATE4.8AMBIENT298
23D_15N-SEPARATED_NOESY2.5MM R98C CYTOCHROME B562; 500MM PHOSPHATE BUFFER; 90% H2O, 10% D2O500mM PHOSPHATE4.8AMBIENT298
3HNHA2.5MM R98C CYTOCHROME B562; 500MM PHOSPHATE BUFFER; 90% H2O, 10% D2O500mM PHOSPHATE4.8AMBIENT298
41D NOE3MM R98C CYTOCHROME B562; 500MM PHOSPHATE BUFFER; 90% H2O, 10% D2O500mM PHOSPHATE4.8AMBIENT298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
TORSION ANGLE DYNAMICS FOLLOWED BY ENERGY MINIMIZATIONA TOTAL OF 4325 NOESY CROSS-PEAKS WAS ASSIGNED, INTEGRATED AND TRANSFORMED IN UPPER DISTANCE LIMITS; 23 DISTANCE CONSTRAINTS WERE DERIVED FROM 1D NOE EXPERIMENTS INVOLVING FAST RELAXING PARAMAGNETIC SHIFTED SIGNALS. TOTALLY, THEY CORRESPONDED TO 2595 UPPER DISTANCE LIMITS, OF WHICH 2145 WERE FOUND TO BE MEANINGFUL. IN ADDITION, 45 3JHNHA COUPLINGS OBTAINED FROM THE HNHA 3D SPECTRUM AND 397 PCS WERE USED FOR THE STRUCTURE CALCULATIONS.XwinNMR
NMR Ensemble Information
Conformer Selection CriteriaENERGY MINIMIZED AVERAGE STRUCTURE
Conformers Calculated Total Number
Conformers Submitted Total Number1
Representative Model (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingXwinNMR
2structure solutionDYANA1.5GUENTERT P., MUMENTHALER, C., & WUTHRICH, K.
3data analysisXEASYECCLES, C., GUENTERT P., BILLETER, M., & WUTHRICH, K.
4structure solutionPSEUDODYANABANCI, L., BERTINI, I., CREMONINI, M.A., GORI SAVELLINI, G., LUCHINAT, C., WUTHRICH, K. & GUENTERT, P.
5refinementAmber5.0PEARLMAN, D.A., CASE, D.A., CALDWELL, J.W., ROSS, W.S., CHEATHAM, T.E., FERGUSON, D.M., SEIBEL, G.L., SINGH, U.C., WEINER, P.K., & KOLLMAN, P.A.