1Q44

Crystal Structure of an Arabidopsis Thaliana Putative Steroid Sulfotransferase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH6297Sodium Malonate, MES, pH 6.0, Micro-Batch, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
2.8957.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.477α = 90
b = 120.899β = 90
c = 74.315γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90CCDMARRESEARCHBent cylindrical Si-mirror (Rh coating)2003-06-27MMAD
21x-ray90MSINGLE WAVELENGTH
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-ID-B0.979APS14-ID-B
2SYNCHROTRONAPS BEAMLINE 14-ID-B1.127APS14-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.95099.20.0480.04843.027.3326973269740.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.91.9798.80.3360.3365.076.63191

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTbuilt from MAD1.9203269730975165499.280.1910.193010.191470.22171RANDOM32.419
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.473-1.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.976
r_scangle_it4.747
r_scbond_it2.941
r_mcangle_it2.207
r_angle_refined_deg1.903
r_mcbond_it1.254
r_angle_other_deg0.948
r_symmetry_hbond_refined0.376
r_symmetry_vdw_other0.312
r_nbd_other0.242
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.976
r_scangle_it4.747
r_scbond_it2.941
r_mcangle_it2.207
r_angle_refined_deg1.903
r_mcbond_it1.254
r_angle_other_deg0.948
r_symmetry_hbond_refined0.376
r_symmetry_vdw_other0.312
r_nbd_other0.242
r_nbd_refined0.218
r_symmetry_vdw_refined0.197
r_xyhbond_nbd_refined0.183
r_chiral_restr0.116
r_nbtor_other0.091
r_bond_refined_d0.02
r_gen_planes_other0.019
r_gen_planes_refined0.014
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2302
Nucleic Acid Atoms
Solvent Atoms214
Heterogen Atoms7

Software

Software
Software NamePurpose
MAR345data collection
SCALEPACKdata scaling
SOLVEphasing
RESOLVEmodel building
REFMACrefinement
RESOLVEphasing