1Q27

NMR Solution Structure of DR0079: An hypothetical Nudix protein from D. radiodurans


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.190% H2O/10% D2O100 mM KCl; 20 mM Potassium phosphate7.1ambient298
23D_13C-separated_NOESY~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.190% H2O/10% D2O100 mM KCl; 20 mM Potassium phosphate7.1ambient298
34D_13C-separated_NOESY~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.190% H2O/10% D2O100 mM KCl; 20 mM Potassium phosphate7.1ambient298
4IPAP-HSQC experiements for RDCs~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.1, pf1 filamentous phage90% H2O/10% D2O100 mM KCl; 20 mM Potassium phosphate7.1ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA750
2VarianINOVA800
3VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsDYANA used for initial refinements. CNS used for final structure calculations with RDCs.DYANA
NMR Ensemble Information
Conformer Selection Criteriaten best structures, in terms of total and NOE energies
Conformers Calculated Total Number225
Conformers Submitted Total Number10
Representative Model6 (n/a)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDYANA1.5Guentert
2structure solutionCNS1.1Brunger
3processingFelix97MSI
4refinementCNS1.1Brunger