1PWA

Crystal structure of Fibroblast Growth Factor 19


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7291PEG 3350, potassium phosphate, magnesium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.3447.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.573α = 90
b = 67.573β = 90
c = 193.374γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2003-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.20.975SRSPX14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32599.90.06236.512.084231313.695
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.321000.5864.3211.32080

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK1.323.3342303205899.750.18070.18070.17980.1954RANDOM14.373
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.34-0.17-0.340.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.524
r_sphericity_free4.108
r_scangle_it3.55
r_sphericity_bonded2.954
r_scbond_it2.258
r_mcangle_it1.97
r_angle_refined_deg1.437
r_rigid_bond_restr1.291
r_mcbond_it1.244
r_angle_other_deg1.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.524
r_sphericity_free4.108
r_scangle_it3.55
r_sphericity_bonded2.954
r_scbond_it2.258
r_mcangle_it1.97
r_angle_refined_deg1.437
r_rigid_bond_restr1.291
r_mcbond_it1.244
r_angle_other_deg1.05
r_symmetry_vdw_other0.347
r_symmetry_vdw_refined0.344
r_symmetry_hbond_refined0.293
r_nbd_other0.278
r_xyhbond_nbd_refined0.266
r_nbd_refined0.23
r_chiral_restr0.099
r_nbtor_other0.084
r_bond_refined_d0.01
r_gen_planes_other0.01
r_gen_planes_refined0.007
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms950
Nucleic Acid Atoms
Solvent Atoms267
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing