1PQX

Solution NMR Structure of Staphylococcus aureus protein SAV1430. Northeast Structural Genomics Consortium Target ZR18.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 15N-NOESY, 3D 13C-NOESY (aliphatic and aromatic)1.3 mM ZR18, 20mM MES, 100mM NaCl, 5mM CaCl2, 10mM DTT, 0.02% NaN3, 5% D20 ph 6.55% D20, 95% H20100 mM NaCl6.5ambient274
2HNHA0.88 mM ZR18, 20mM MES, 100mM NaCl, 5mM CaCl2, 10mM DTT, 0.02% NaN3, 5% D20 ph 6.55% D20, 95% H20100 mM NaCl6.5ambient274
3high resolution 13C, 1H-HSQC1.3 mM ZR18, 20mM MES, 100mM NaCl, 5mM CaCl2, 10mM DTT, 0.02% NaN3, 5% D20 ph 6.55% D20, 95% H20100 mM NaCl6.5ambient274
4H/D exchange0.88 mM ZR18, 20mM MES, 100mM NaCl, 5mM CaCl2, 10mM DTT, 0.02% NaN3, 5% D20 ph 6.55% D20, 95% H20100 mM NaCl6.5ambient274
5backbone TR experiments and 3D TOCSY's1.3 mM ZR18, 20mM MES, 100mM NaCl, 5mM CaCl2, 10mM DTT, 0.02% NaN3, 5% D20 ph 6.55% D20, 95% H20100 mM NaCl6.5ambient274
6HCCH-COSY1.3 mM ZR18, 20mM MES, 100mM NaCl, 5mM CaCl2, 10mM DTT, 0.02% NaN3, 5% D20 ph 6.55% D20, 95% H20100 mM NaCl6.5ambient274
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianUNITY600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsThe structures are based on a total of 1100 conformationally-restricting NOE-derived distance restraints, 185 dihedral angle restraints, and 28 hydrogen bond restraints.(14.8 constraints per residue; 4.4 long-range constraints per residue). Structure Determination was performed iterativly using AutoStructure (XPLOR). The constrain file for this entry was updated to correspond to the XPLOR format on September 28, 2004.VNMR
NMR Ensemble Information
Conformer Selection Criteriaoverall energy
Conformers Calculated Total Number56
Conformers Submitted Total Number10
Representative Model1 (lowest target function)
Additional NMR Experimental Information
DetailsThe structure was determined using triple-resonance nmr spectroscopy. All Automatic analysis software was run out of the SPINS software. Automatic backbone resonance assignments were made using autoassign. automatic noesy assignments as well as distance and hydrogen bond restraints were determined using hyper and talos.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1BVarian
2processingNMRPipe2.1Delaglio
3processingAutoProc1.0Bayro, Montelione
4data analysisSparky3.106Goddard
5data analysisAutoAssign1.9Zimmerman, Moseley, Montelione
6data analysisAutoStructure1.1.2Huang, Montelione
7structure solutionX-PLOR
8refinementX-PLOR