1PP1

Crystal structure of the Borna Disease Virus Nucleoprotein


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.0860.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.261α = 90
b = 100.261β = 90
c = 103.34γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100AREA DETECTORMARRESEARCHMMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X310.9793, 0.802, 0.9787EMBL/DESY, HamburgX31

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.93095.30.0617.073.193861520.507
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9775.10.2321.52.33019

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.929.2336657195796.090.154840.153370.1822RANDOM19.554
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.270.27-0.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.787
r_scangle_it4.355
r_scbond_it2.669
r_mcangle_it1.919
r_angle_refined_deg1.414
r_angle_other_deg1.411
r_mcbond_it1.031
r_symmetry_vdw_other0.301
r_nbd_other0.238
r_nbd_refined0.217
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.787
r_scangle_it4.355
r_scbond_it2.669
r_mcangle_it1.919
r_angle_refined_deg1.414
r_angle_other_deg1.411
r_mcbond_it1.031
r_symmetry_vdw_other0.301
r_nbd_other0.238
r_nbd_refined0.217
r_symmetry_hbond_refined0.213
r_xyhbond_nbd_refined0.188
r_symmetry_vdw_refined0.153
r_chiral_restr0.089
r_nbtor_other0.086
r_bond_refined_d0.015
r_gen_planes_other0.008
r_gen_planes_refined0.007
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2591
Nucleic Acid Atoms
Solvent Atoms382
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing