1PJW

Solution Structure of the Domain III of the Japan Encephalitis Virus Envelope Protein

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D NOESY	2.3mM JEV domain III protein, N15-C13 labled and N15-labled, 136mM NaCl, 2.68mM KCl, 10mM Na2HPO4, 1.76mM KH2PO4	90% H2O/10% D2O		7.5	ambient	308
2	2D TOCSY	2.3mM JEV domain III protein, N15-C13 labled and N15-labled, 136mM NaCl, 2.68mM KCl, 10mM Na2HPO4, 1.76mM KH2PO4	90% H2O/10% D2O		7.5	ambient	308
3	3D_15N-separated_NOESY	2.3mM JEV domain III protein, N15-C13 labled and N15-labled, 136mM NaCl, 2.68mM KCl, 10mM Na2HPO4, 1.76mM KH2PO4	90% H2O/10% D2O		7.5	ambient	308
4	3D_13C-separated_NOESY	2.3mM JEV domain III protein, N15-C13 labled and N15-labled, 136mM NaCl, 2.68mM KCl, 10mM Na2HPO4, 1.76mM KH2PO4	90% H2O/10% D2O		7.5	ambient	308
5	HNHA	2.3mM JEV domain III protein, N15-C13 labled and N15-labled, 136mM NaCl, 2.68mM KCl, 10mM Na2HPO4, 1.76mM KH2PO4	90% H2O/10% D2O		7.5	ambient	308

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	600

NMR Refinement
Method	Details	Software
simulated annealing	The structures are based on a total of 957 restraints, 717 are NOE-derived distance constraints, 194 dihedral angle restraints,46 distance restraints from hydrogen bonds.	XwinNMR

NMR Ensemble Information
Conformer Selection Criteria	structures with acceptable covalent geometry, structures with favorable non-bond energy, structures with the least restraint violations, structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	15
Representative Model	1 (lowest energy)

Additional NMR Experimental Information
Details	The structure was determined using triple-resonance NMR spectroscopy.

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	XwinNMR	2.6	Bo Blanton
2	processing	AURELIA	2.1	Peter Neidig
3	data analysis	NMRPipe		Delaglio F.
4	structure solution	X-PLOR	3.851	Brunger
5	refinement	X-PLOR	3.851

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.