1PIB
Solution structure of DNA containing CPD opposited by GA
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 1mM DNA, 20mM phosphate buffer | 90% H2O/10% D2O | 100mM NaCl | 7.0 | ambient | 277 | |
| 2 | 2D NOESY | 1mM DNA, 20mM phosphate buffer | 99.9% D2O | 100mM NaCl | 7.0 | ambient | 300 | |
| 3 | 2D NOESY | 1mM DNA, 20mM phosphate buffer | 99.9% D2O | 100mM NaCl | 7.0 | ambient | 290 | |
| 4 | DQF-COSY | 1mM DNA, 20mM phosphate buffer | 99.9% D2O | 100mM NaCl | 7.0 | ambient | 290 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with acceptable covalent geometry |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 16 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Frank Delaglio | |
| 2 | structure solution | X-PLOR | 3.1 | Brunger |
| 3 | data analysis | Sparky | 3.106 | T. D. Goddard |
| 4 | refinement | X-PLOR | 3.1 | Brunger |
