1PF3

Crystal Structure of the M441L mutant of the multicopper oxidase CueO


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629520% PEG, 200 mM ammonium acetate, 100 mM sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 22K
Crystal Properties
Matthews coefficientSolvent content
2.2144.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.445α = 90
b = 91.193β = 102.35
c = 53.905γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-12-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-C0.9APS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.510860.06620.22.36371463714
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.51.55940.182.92.27119

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUTpdb entry 1KV71.5106371463714321183.740.192830.190990.22757from pdb entry 1KV715.712
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.678
r_scangle_it4.091
r_scbond_it2.592
r_mcangle_it1.625
r_angle_refined_deg1.571
r_mcbond_it0.927
r_angle_other_deg0.851
r_nbd_other0.254
r_symmetry_vdw_other0.254
r_nbd_refined0.204
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.678
r_scangle_it4.091
r_scbond_it2.592
r_mcangle_it1.625
r_angle_refined_deg1.571
r_mcbond_it0.927
r_angle_other_deg0.851
r_nbd_other0.254
r_symmetry_vdw_other0.254
r_nbd_refined0.204
r_symmetry_hbond_refined0.153
r_symmetry_vdw_refined0.146
r_xyhbond_nbd_refined0.134
r_chiral_restr0.097
r_nbtor_other0.085
r_bond_refined_d0.015
r_gen_planes_other0.01
r_gen_planes_refined0.009
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3565
Nucleic Acid Atoms
Solvent Atoms427
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata scaling