1P5U

X-ray structure of the ternary Caf1M:Caf1:Caf1 chaperone:subunit:subunit complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.9293PEG 8000, calcium acetate, cacodylate, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4449.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 178.816α = 90
b = 69.62β = 90
c = 45.271γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-09-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9987.710.0865.45.4345363453623.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.992.15820.2433.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTRefined model of binary Caf1M:Caf1 pre-assembly complex1.9987.713444532723175487.280.16820.165550.21634RANDOM17.994
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.79-0.36-0.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.204
r_scangle_it5.602
r_scbond_it3.522
r_mcangle_it2.264
r_angle_refined_deg2.06
r_mcbond_it1.31
r_angle_other_deg0.954
r_symmetry_vdw_other0.289
r_nbd_other0.266
r_symmetry_vdw_refined0.241
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.204
r_scangle_it5.602
r_scbond_it3.522
r_mcangle_it2.264
r_angle_refined_deg2.06
r_mcbond_it1.31
r_angle_other_deg0.954
r_symmetry_vdw_other0.289
r_nbd_other0.266
r_symmetry_vdw_refined0.241
r_nbd_refined0.199
r_xyhbond_nbd_refined0.155
r_symmetry_hbond_refined0.147
r_chiral_restr0.136
r_nbtor_other0.093
r_bond_refined_d0.027
r_gen_planes_refined0.01
r_gen_planes_other0.005
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3692
Nucleic Acid Atoms
Solvent Atoms290
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement
CCP4data scaling