1OYX

CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (SELENO-MET) AT 1.85 ANGSTROM


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293PEG MME 5000, MES, DTT, ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5551.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.656α = 90
b = 105.656β = 90
c = 90.369γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDmirrors2002-09-15MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-ID-B1.06334, 0.97935, 0.97914, 0.95668APS14-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85200.0593.12
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.851.90.554088

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.8519.84288633467896.980.208530.206980.23822RANDOM31.19
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.040.07-0.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.202
r_scangle_it4.362
r_scbond_it2.791
r_mcangle_it1.954
r_angle_refined_deg1.581
r_mcbond_it1.071
r_angle_other_deg0.956
r_symmetry_vdw_refined0.389
r_symmetry_hbond_refined0.378
r_symmetry_vdw_other0.362
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.202
r_scangle_it4.362
r_scbond_it2.791
r_mcangle_it1.954
r_angle_refined_deg1.581
r_mcbond_it1.071
r_angle_other_deg0.956
r_symmetry_vdw_refined0.389
r_symmetry_hbond_refined0.378
r_symmetry_vdw_other0.362
r_nbd_other0.258
r_nbd_refined0.214
r_xyhbond_nbd_refined0.17
r_chiral_restr0.101
r_nbtor_other0.089
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_gen_planes_other0.008
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7635
Nucleic Acid Atoms
Solvent Atoms507
Heterogen Atoms154

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
CNSphasing