1OYG

Crystal structure of Bacillus subtilis levansucrase


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.141.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.11α = 90
b = 67.014β = 90
c = 123.681γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-12-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID291.18ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.53098.40.0915.1678369

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.53026423164231338698.230.16550.164990.17508RANDOM4.176
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.340.070.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.285
r_scangle_it1.656
r_angle_refined_deg1.078
r_scbond_it1.059
r_angle_other_deg0.73
r_mcangle_it0.567
r_mcbond_it0.291
r_symmetry_vdw_other0.252
r_nbd_other0.236
r_nbd_refined0.197
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.285
r_scangle_it1.656
r_angle_refined_deg1.078
r_scbond_it1.059
r_angle_other_deg0.73
r_mcangle_it0.567
r_mcbond_it0.291
r_symmetry_vdw_other0.252
r_nbd_other0.236
r_nbd_refined0.197
r_symmetry_vdw_refined0.135
r_symmetry_hbond_refined0.117
r_xyhbond_nbd_refined0.085
r_nbtor_other0.08
r_chiral_restr0.07
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3442
Nucleic Acid Atoms
Solvent Atoms366
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SOLVEphasing