X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.3291PEG 3350, PEG 400, Tris, NaI, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.4549.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.402α = 90
b = 149.045β = 90
c = 176.422γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2000-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.97ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13598.90.07916.2732997329944
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1598.30.3423.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.136.511694886948837491000.194710.191490.25561RANDOM20.429
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.120.030.09
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it24.632
r_scbond_it23.579
r_dihedral_angle_2_deg15.697
r_mcangle_it15.573
r_mcbond_it12.692
r_dihedral_angle_1_deg3.348
r_angle_refined_deg1.102
r_symmetry_hbond_refined1.033
r_nbd_refined0.271
r_xyhbond_nbd_refined0.222
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it24.632
r_scbond_it23.579
r_dihedral_angle_2_deg15.697
r_mcangle_it15.573
r_mcbond_it12.692
r_dihedral_angle_1_deg3.348
r_angle_refined_deg1.102
r_symmetry_hbond_refined1.033
r_nbd_refined0.271
r_xyhbond_nbd_refined0.222
r_symmetry_vdw_refined0.193
r_chiral_restr0.073
r_metal_ion_refined0.066
r_bond_refined_d0.006
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8085
Nucleic Acid Atoms
Solvent Atoms810
Heterogen Atoms144

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing