1OW4

Crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae in complex with the fluorescent reporter ANS (1-anilinonaphtalene-8-sulfonic acid),


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.5293PEG 10000, Imidazole/malate., pH 8.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.651.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.422α = 118.55
b = 45.07β = 92.63
c = 45.379γ = 107.17
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2002-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.97887ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.625.90684.40.0570.0577.61.934113313334.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6984.40.1220.1224.81.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTLma-PBP (native)1.6204.83711829762156584.40.1760.176020.174330.20843RANDOM19.55
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.34-0.02-0.890.470.21-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.872
r_scangle_it3.945
r_angle_other_deg2.853
r_scbond_it2.564
r_angle_refined_deg1.762
r_mcangle_it1.635
r_mcbond_it0.899
r_symmetry_vdw_other0.36
r_nbd_other0.248
r_nbd_refined0.216
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.872
r_scangle_it3.945
r_angle_other_deg2.853
r_scbond_it2.564
r_angle_refined_deg1.762
r_mcangle_it1.635
r_mcbond_it0.899
r_symmetry_vdw_other0.36
r_nbd_other0.248
r_nbd_refined0.216
r_symmetry_hbond_refined0.193
r_xyhbond_nbd_refined0.161
r_symmetry_vdw_refined0.132
r_chiral_restr0.101
r_nbtor_other0.101
r_gen_planes_other0.016
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1821
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
AMoREphasing