1OVY
Solution Structure of Ribosomal Protein L18 from Bacillus stearothermophilus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM L18; 20mM phosphate buffer; 200mM NaCl; 5mM MgCl2 | 90% H2O/10% D2O | 12mM KH2PO4; 8mM NaH2PO4; 200mM NaCl, 5mM MgCl2 | 6.0 | 1 atm | 298 | |
2 | 3D_15N-separated_NOESY | 1.5mM L18 U-15N; 20mM phosphate buffer; 200mM NaCl; 5mM MgCl2 | 90% H2O/10% D2O | 12mM KH2PO4; 8mM NaH2PO4; 200mM NaCl, 5mM MgCl2 | 6.0 | 1 atm | 298 | |
3 | 3D_13C-separated_NOESY | 1.5mM L18 U-15N,13C; 20mM phosphate buffer; 200mM NaCl; 5mM MgCl2 | 90% H2O/10% D2O | 12mM KH2PO4; 8mM NaH2PO4; 200mM NaCl, 5mM MgCl2 | 6.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
NMR Refinement | ||
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Method | Details | Software |
Aria was used to select and assign peak lists from NOESY experiments. CNS as modified for use with ARIA was used for structure calculation using torsion angle simulated annealing. | The structures are based on a total of 2272 restraints. 1188 are unambiguous distance constraints, 913 are ambiguous distance constraints, 128 are dihedral angle restraints, and 43 are hydrogen bond restraints. | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 150 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | This structure was determined using triple resonance NMR spectroscopy. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 97.0 | Biosym/MSI |
2 | data analysis | Sparky | 3.93 | Goddard, T.D. & Kneller, D.G. |
3 | structure solution | CNS | 1.0 | Brunger, A.T. et al. |
4 | structure solution | ARIA | 1.2 | Linge, J.P. & Nilges, M. |
5 | refinement | CNS | 1.0 | Brunger, A.T. et al. |
6 | refinement | ARIA | 1.2 | Linge, J.P. & Nilges, M. |