X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.6298Na Acetate, CuSO4, CaCl2, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5351.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.387α = 90
b = 88.287β = 90
c = 125.853γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4Diamond (111), Ge(220)2003-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.9322ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15200.0730.0735.36.54331243312
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.152.299.90.470.471.84.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1NAQ2.1520411163970136151000.19540.189460.26001RANDOM57.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
6.19-1.98-4.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg10.004
r_scangle_it7.774
r_scbond_it4.863
r_mcangle_it3.294
r_angle_refined_deg2.685
r_mcbond_it1.832
r_symmetry_hbond_refined0.359
r_nbd_refined0.278
r_symmetry_vdw_refined0.258
r_chiral_restr0.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg10.004
r_scangle_it7.774
r_scbond_it4.863
r_mcangle_it3.294
r_angle_refined_deg2.685
r_mcbond_it1.832
r_symmetry_hbond_refined0.359
r_nbd_refined0.278
r_symmetry_vdw_refined0.258
r_chiral_restr0.23
r_xyhbond_nbd_refined0.22
r_bond_refined_d0.034
r_gen_planes_refined0.013
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5090
Nucleic Acid Atoms
Solvent Atoms405
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing