1OPP
PEPTIDE OF HUMAN APOLIPOPROTEIN C-I RESIDUES 1-38, NMR, 28 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D-NOESY | 5 mM apoC, 300 mM SDS-d2s | 90% H2O/10% D2O | 4.8 | 310 | |||
2 | 2D-TOCSY | 5 mM apoC, 300 mM SDS-d2s | 90% H2O/10% D2O | 4.8 | 310 | |||
3 | DQF-COSY | 5 mM apoC, 300 mM SDS-d2s | 99.9% D2O | 4.8 | 310 | |||
4 | 2D-NOESY | 5 mM apoC, 300 mM SDS-d2s | 99.9% D2O | 4.8 | 310 | |||
5 | 2D-NOESY | 5 mM apoC, 50 mM potassium chloride, 20 mM potassium phosphate | 50% (v/v) TFE-d, 10% D2O | 4.8 | 310 | |||
6 | 2D-TOCSY | 5 mM apoC, 50 mM potassium chloride, 20 mM potassium phosphate | 50% (v/v) TFE-d, 10% D2O | 4.8 | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX 600 | 600 |
NMR Refinement | ||
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Method | Details | Software |
DISTANCE GEOMETRY/ SIMULATED ANNEALING | THE STRUCTURE OF APOC-I(1-38) IN THE PRESENCE OF SODIUM DODECYL SULFATE WAS REFINED USING 464 NOE-BASED DISTANCE RESTRAINTS. NO DIHEDRAL RESTRAINTS WERE USED. THIS ENTRY CONTAINS ALL 28 ACCEPTED STRUCTURES. STRUCTURE CALCULATIONS WERE PERFORMED WITH THE PROGRAM DGII (BIOSYM/MSI, SAN DIEGO, CA) INCLUDING DISTANCE GEOMETRY CALCULATIONS, SIMULATED ANNEALING AND ENERGY MINIMIZATION WITH A CONJUGATED GRADIENT. THE CVFF FORCE FIELD WAS USED. FOR DETAILS ON STRUCTURE CALCULATION AND RMSDS PLEASE SEE REFERENCE CITED ON JRNL RECORDS ABOVE. | DGII |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 28 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | DGII | HAVEL | |
2 | structure solution | DGII | HAVEL |