1OMW

Crystal Structure of the complex between G Protein-Coupled Receptor Kinase 2 and Heterotrimeric G Protein beta 1 and gamma 2 subunits


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.75277PEG 3350, Sodium Chloride, CHAPS, ATP, Magnesium Chloride, Mastoparan , MES pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
359.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 188.2α = 90
b = 72.5β = 115.2
c = 122.79γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHOsmic confocal Max-flux2002-06-15MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 2102002-07-17MSINGLE WAVELENGTH
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200H1.5418
2SYNCHROTRONALS BEAMLINE 8.2.11.000ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.52073.60.0515.32.413508456160-2-237.42
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.52.5912.70.2532.70.671977

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTThe structure was initally solved with R-free as the cross validation method, but for the last three rounds of refinement, the structure was refined against all of the data.PDB ENTRY 1ABG, 1ATP, 1BAK, 1DK82.520-23824936307194273.620.21640.216480.202230.25196RANDOM27.933
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-6.04-6.288.91-8.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.169
r_scangle_it4.124
r_scbond_it2.529
r_angle_refined_deg2.035
r_mcangle_it1.691
r_angle_other_deg1.007
r_mcbond_it0.894
r_symmetry_vdw_other0.247
r_nbd_other0.244
r_symmetry_hbond_refined0.237
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.169
r_scangle_it4.124
r_scbond_it2.529
r_angle_refined_deg2.035
r_mcangle_it1.691
r_angle_other_deg1.007
r_mcbond_it0.894
r_symmetry_vdw_other0.247
r_nbd_other0.244
r_symmetry_hbond_refined0.237
r_nbd_refined0.232
r_xyhbond_nbd_refined0.196
r_symmetry_vdw_refined0.164
r_chiral_restr0.103
r_nbtor_other0.099
r_bond_refined_d0.024
r_gen_planes_refined0.008
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8125
Nucleic Acid Atoms
Solvent Atoms26
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing