1O6S

Internalin (Listeria monocytogenes) / E-Cadherin (human) Recognition Complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6VAPOUR DIFFUSION / HANGING DROP 10 MG/ML IN 10 MM HEPES PH 7.0, 26% PEG 4000, 100 MM MES/TRIS PH 7.0, 100 MM SODIUM ACETATE, 50 MM CACL2
Crystal Properties
Matthews coefficientSolvent content
2.1442

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.378α = 90
b = 86.859β = 90
c = 110.723γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2002-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW6MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.825.1920.06214.46.250336
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8684.30.3853.44.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.869.0143962234492.10.1710.1680.221RANDOM23.05
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.781.1-0.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.912
r_scangle_it3.879
r_scbond_it2.36
r_angle_refined_deg1.605
r_mcangle_it1.554
r_angle_other_deg0.917
r_mcbond_it0.896
r_symmetry_vdw_other0.271
r_nbd_other0.246
r_nbd_refined0.212
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.912
r_scangle_it3.879
r_scbond_it2.36
r_angle_refined_deg1.605
r_mcangle_it1.554
r_angle_other_deg0.917
r_mcbond_it0.896
r_symmetry_vdw_other0.271
r_nbd_other0.246
r_nbd_refined0.212
r_symmetry_hbond_refined0.201
r_xyhbond_nbd_refined0.181
r_symmetry_vdw_refined0.133
r_chiral_restr0.099
r_nbtor_other0.087
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4301
Nucleic Acid Atoms
Solvent Atoms537
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
EPMRphasing