X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.529340%v/v PEG 400, 200mM Mgcl2, 100mM citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5250.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.756α = 90
b = 92.416β = 90
c = 36.662γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-09-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.11.488SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.939.295.040.16.4105902231.22
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.95960.5022

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NXT1.940229654103895.40.19910.195450.23291RANDOM31.22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.99-2.5-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.269
r_scangle_it5.441
r_scbond_it3.046
r_mcangle_it2.264
r_angle_refined_deg1.737
r_mcbond_it1.233
r_angle_other_deg0.866
r_symmetry_vdw_other0.348
r_symmetry_vdw_refined0.276
r_nbd_refined0.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.269
r_scangle_it5.441
r_scbond_it3.046
r_mcangle_it2.264
r_angle_refined_deg1.737
r_mcbond_it1.233
r_angle_other_deg0.866
r_symmetry_vdw_other0.348
r_symmetry_vdw_refined0.276
r_nbd_refined0.274
r_nbd_other0.268
r_xyhbond_nbd_refined0.231
r_symmetry_hbond_refined0.173
r_nbtor_other0.091
r_chiral_restr0.09
r_bond_refined_d0.019
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms903
Nucleic Acid Atoms
Solvent Atoms60
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing