X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.1293PEG 300, Sodium acetate, pH 5.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.448.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.353α = 90
b = 92.622β = 90
c = 36.892γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMACSCIENCE2002-12-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM141.024ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9228.8799.04105222228.02
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9191.96998.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NXT1.9228.8729519101899.040.188390.18460.22382RANDOM28.022
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.61-2.21-1.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.141
r_scangle_it4.875
r_scbond_it2.797
r_mcangle_it1.879
r_angle_refined_deg1.66
r_mcbond_it1.004
r_angle_other_deg0.902
r_symmetry_hbond_refined0.498
r_symmetry_vdw_other0.333
r_symmetry_vdw_refined0.261
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.141
r_scangle_it4.875
r_scbond_it2.797
r_mcangle_it1.879
r_angle_refined_deg1.66
r_mcbond_it1.004
r_angle_other_deg0.902
r_symmetry_hbond_refined0.498
r_symmetry_vdw_other0.333
r_symmetry_vdw_refined0.261
r_nbd_other0.25
r_nbd_refined0.248
r_xyhbond_nbd_refined0.242
r_chiral_restr0.107
r_nbtor_other0.093
r_bond_refined_d0.02
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms935
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing