1NS6

The 2.1A Structure of Horse (alpha hemichrome/beta met) Hemoglobin at pH 5.4


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.42981.5M ammonium sulfate, 0.35M ammonium phosphate then soaked to pH 5.4 in solutions of 3.35 M ammonium sulfate buffered with 0.2M ammonium phosphate, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7655.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.11α = 90
b = 63.33β = 84.72
c = 53.85γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298AREA DETECTORUCSD MARK II1997-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.043097.20.053218842

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB entry 1G0B2.0554.23221824216095.460.1890.162620.162620.188random18.383
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.040.08-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg15.069
r_scangle_it4.499
r_dihedral_angle_1_deg3.282
r_scbond_it2.613
r_mcangle_it1.599
r_angle_refined_deg1.244
r_mcbond_it0.778
r_angle_other_deg0.732
r_symmetry_vdw_refined0.275
r_nbd_refined0.228
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg15.069
r_scangle_it4.499
r_dihedral_angle_1_deg3.282
r_scbond_it2.613
r_mcangle_it1.599
r_angle_refined_deg1.244
r_mcbond_it0.778
r_angle_other_deg0.732
r_symmetry_vdw_refined0.275
r_nbd_refined0.228
r_nbd_other0.187
r_xyhbond_nbd_refined0.168
r_symmetry_vdw_other0.135
r_symmetry_hbond_refined0.1
r_chiral_restr0.076
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2203
Nucleic Acid Atoms
Solvent Atoms84
Heterogen Atoms86

Software

Software
Software NamePurpose
REFMACrefinement
SDMSdata reduction
CNSrefinement
SDMSdata collection
SDMSdata scaling
CNSphasing