1NQF

OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.6293PEG3350, MAGNESIUM ACETATE, BIS-TRIS, N-OCTYL TETRAOXYETHELYENE, tris-(2-carboxyethyl)phosphine hydrochloride , pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.2762.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.614α = 90
b = 81.614β = 90
c = 226.653γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-2Rosenbaum-Rock vertical focusing mirror2002-03-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9790APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.73095.40.08520.26.644260-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.884.60.5362.73915

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSAD/DMTHROUGHOUT2.7202283222706121696.450.2460.2460.2440.288RANDOM39.163
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.560.280.56-0.84
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it25.098
r_dihedral_angle_3_deg22.895
r_scbond_it20.052
r_mcangle_it13.703
r_mcbond_it11.309
r_dihedral_angle_1_deg5.664
r_angle_refined_deg1.818
r_angle_other_deg0.77
r_symmetry_hbond_other0.592
r_symmetry_hbond_refined0.565
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it25.098
r_dihedral_angle_3_deg22.895
r_scbond_it20.052
r_mcangle_it13.703
r_mcbond_it11.309
r_dihedral_angle_1_deg5.664
r_angle_refined_deg1.818
r_angle_other_deg0.77
r_symmetry_hbond_other0.592
r_symmetry_hbond_refined0.565
r_symmetry_vdw_other0.41
r_nbd_refined0.374
r_symmetry_vdw_refined0.365
r_nbd_other0.349
r_xyhbond_nbd_refined0.204
r_xyhbond_nbd_other0.115
r_chiral_restr0.1
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_gen_planes_other0.003
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4294
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms127

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
SnBphasing
CNSrefinement
SHARPphasing
DENZOdata reduction
CNSphasing