1NNR

Crystal structure of a probable fosfomycin resistance protein (PA1129) from Pseudomonas aeruginosa with sulfate present in the active site


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5298ammonium sulfate, MES, cobaltous (II) chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.8332.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.93α = 90
b = 64.524β = 90
c = 78.825γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113IMAGE PLATERIGAKU RAXIS IVmirrors2002-09-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.252089.70.08912.581140810221-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.3360.30.3163.1663

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LQP2.252010221964254089.770.196880.196880.19270.2675RANDOM30.781
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.632.89-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.745
r_scangle_it4.325
r_scbond_it2.707
r_angle_refined_deg1.805
r_mcangle_it1.649
r_angle_other_deg1.567
r_mcbond_it0.932
r_symmetry_vdw_refined0.311
r_symmetry_vdw_other0.287
r_symmetry_hbond_refined0.263
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.745
r_scangle_it4.325
r_scbond_it2.707
r_angle_refined_deg1.805
r_mcangle_it1.649
r_angle_other_deg1.567
r_mcbond_it0.932
r_symmetry_vdw_refined0.311
r_symmetry_vdw_other0.287
r_symmetry_hbond_refined0.263
r_nbd_other0.255
r_nbd_refined0.209
r_xyhbond_nbd_refined0.201
r_chiral_restr0.104
r_nbtor_other0.088
r_bond_refined_d0.022
r_gen_planes_refined0.008
r_gen_planes_other0.006
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2124
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing