1N8T

The crystal structure of phosphoglucose isomerase from rabbit muscle


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5294polyethylene glycol 6000, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.5952.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.067α = 90
b = 115.174β = 90
c = 271.5γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IICmirrors1996-09-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.42091.60.0550.05517.73.5474434744325.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.42.4468.80.1840.1844.81761

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIR and multi-crystal averagingTHROUGHOUT2.5154030321421000.180570.177770.23366RANDOM24.001
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.220.22-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.691
r_dihedral_angle_1_deg3.631
r_scangle_it2.7
r_scbond_it1.614
r_angle_refined_deg1.441
r_mcangle_it0.955
r_mcbond_it0.48
r_nbd_refined0.24
r_xyhbond_nbd_refined0.171
r_symmetry_vdw_refined0.156
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.691
r_dihedral_angle_1_deg3.631
r_scangle_it2.7
r_scbond_it1.614
r_angle_refined_deg1.441
r_mcangle_it0.955
r_mcbond_it0.48
r_nbd_refined0.24
r_xyhbond_nbd_refined0.171
r_symmetry_vdw_refined0.156
r_chiral_restr0.103
r_symmetry_hbond_refined0.081
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8834
Nucleic Acid Atoms
Solvent Atoms509
Heterogen Atoms

Software

Software
Software NamePurpose
SCALEPACKdata scaling
MLPHAREphasing
REFMACrefinement