1N0A

Turn stability in beta-hairpin peptides: 3:5 type I G1 bulge turns


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D ROESY8 mM peptide, no buffer90% H2O/10% D2O05.01 atm303
22D TOCSY8 mM peptide, no buffer90% H2O/10% D2O05.01 atm303
3DQF-COSY8 mM peptide, no buffer90% H2O/10% D2O05.01 atm303
42D ROESY8 mM peptide, no buffer100% D2O05.01 atm303
52D COSY-358 mM peptide, no buffer100% D2O05.01 atm303
62D 13C-HMQC8 mM peptide, no buffer100% D2O05.01 atm303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
distance geometry and restrained molecular dynamics100 distance geometry structures were calculated. The 80 structures of lowest penalty function were further refined using restrained molecular dynamics. The 20 structures of lowest restraint violation energy were used to describe the structure. 61 distance and 21 dihedral angle restraints were used. The final ensemble has no distance violations greater than 0.1 A and no dihedral angle vioaltions greater than 1 degree. 95% of the residues are in the most favourable region of the Ramachandran plot. The mean backbone atom rmsd to the mean structure is 0.29+/-0.05 A.DGII
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number80
Conformers Submitted Total Number21
Representative Model3 (closest to the average)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2D homonuclear techniques augmented by loose phi and psi restraints generated from TALOS. MODEL 21 is the average minimized structure.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDGII98.0Tim Havel
2refinementDiscover3.0Accelrys
3data analysisNMRPipe2001Frank Delaglio
4data analysisFelix98.0Accelrys
5collectionXwinNMR3.1Bruker