1MZK

NMR structure of kinase-interacting FHA domain of kinase associated protein phosphatase, KAPP in Arabidopsis


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 93% H2O, 7%D2O93% H2O/7% D2O20mM phosphaste/120mM NaCl6.3ambient295
23D_13C-separated_NOESY0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 93% H2O, 7%D2O93% H2O/7% D2O20mM phosphaste/120mM NaCl6.3ambient295
3HMQC-J0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 93% H2O, 7%D2O93% H2O/7% D2O20mM phosphaste/120mM NaCl6.3ambient295
415N HSQC for H/D exhange0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 100%D2O100% D2O20mM phosphaste/120mM NaCl6.3ambient293
53D_HNCO for 1Dnco, 1Dcaco0.5mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 9.5mg/ml Pf1 phage, 90%H2O, 10%D2O90% H2O/10% D2O20mM phosphaste/120mM NaCl6.3ambient298
615N HSQC for 1Dnh0.5mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 9.5mg/ml Pf1 phage, 90%H2O, 10%D2O90% H2O/10% D2O20mM phosphaste/120mM NaCl6.3ambient298
715N HSQC for 1Dnh0.4mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 5% C12H6/Hexanol,90%H2O, 10%D2O90% H2O/10% D2O20mM phosphaste/120mM NaCl/5%PEG/hexano6.3ambient298
83D_HNCA for 1Dcaha0.5mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 9.5mg/ml Pf1 phage, 90%H2O, 10%D2O90% H2O/10% D2O20mM phosphaste/120mM NaCl6.3ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics and simulated annealing in cartesian space and residual dipolar couplingsthe structures are based on 1313 interresidue NOE-derived distance constraints, 176 dihedral angle restraints, 54 distance restraints from hydrogen bonds,as well as 131 1Dnh, 55 1Dcaha, 37 1Dnco, 58 1Dcaco residual dipolar coupling restraints. The covalent bond angle deviations, listed in remark 500, result from refinement using residual dipolar couplings and have occurred in some structures with high energy. The residues with torsion angle deviations are relatively mobile and poorly defined in the model.UXNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number30
Representative Model1 (closest to the average)
Additional NMR Experimental Information
DetailsThe structure was determined using triple-resonance NMR spectroscopy. Residues preceding 180 originated from linker of GST tag. Residues beyond 298 are unstructured. Note that in all the models the residues A175-A176 and A299-A313 are disordered and missing from the model
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionUXNMR1.3Bruker
2collectionVNMR6.1BVarian
3processingSYBYL6.3Tripos
4structure solutionCNS1.0A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros, R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren
5refinementCNS1.0A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros, R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren