1MZK
NMR structure of kinase-interacting FHA domain of kinase associated protein phosphatase, KAPP in Arabidopsis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 93% H2O, 7%D2O | 93% H2O/7% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 295 | |
2 | 3D_13C-separated_NOESY | 0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 93% H2O, 7%D2O | 93% H2O/7% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 295 | |
3 | HMQC-J | 0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 93% H2O, 7%D2O | 93% H2O/7% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 295 | |
4 | 15N HSQC for H/D exhange | 0.6mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 100%D2O | 100% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 293 | |
5 | 3D_HNCO for 1Dnco, 1Dcaco | 0.5mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 9.5mg/ml Pf1 phage, 90%H2O, 10%D2O | 90% H2O/10% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 298 | |
6 | 15N HSQC for 1Dnh | 0.5mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 9.5mg/ml Pf1 phage, 90%H2O, 10%D2O | 90% H2O/10% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 298 | |
7 | 15N HSQC for 1Dnh | 0.4mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 5% C12H6/Hexanol,90%H2O, 10%D2O | 90% H2O/10% D2O | 20mM phosphaste/120mM NaCl/5%PEG/hexano | 6.3 | ambient | 298 | |
8 | 3D_HNCA for 1Dcaha | 0.5mM kinase interacting FHA domain; 20mM phosphate pH6.3; 120mM NaCl, 9.5mg/ml Pf1 phage, 90%H2O, 10%D2O | 90% H2O/10% D2O | 20mM phosphaste/120mM NaCl | 6.3 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics and simulated annealing in cartesian space and residual dipolar couplings | the structures are based on 1313 interresidue NOE-derived distance constraints, 176 dihedral angle restraints, 54 distance restraints from hydrogen bonds,as well as 131 1Dnh, 55 1Dcaha, 37 1Dnco, 58 1Dcaco residual dipolar coupling restraints. The covalent bond angle deviations, listed in remark 500, result from refinement using residual dipolar couplings and have occurred in some structures with high energy. The residues with torsion angle deviations are relatively mobile and poorly defined in the model. | UXNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. Residues preceding 180 originated from linker of GST tag. Residues beyond 298 are unstructured. Note that in all the models the residues A175-A176 and A299-A313 are disordered and missing from the model |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | UXNMR | 1.3 | Bruker |
2 | collection | VNMR | 6.1B | Varian |
3 | processing | SYBYL | 6.3 | Tripos |
4 | structure solution | CNS | 1.0 | A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros, R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren |
5 | refinement | CNS | 1.0 | A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros, R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren |