1MRZ

Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION7.52930.2M Na Citrate, 23% PEG 3350, 10% Glycerol, pH 7.5, EVAPORATION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5150.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.211α = 90
b = 83.095β = 116.93
c = 67.851γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.20.97911ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92596.90.038273.95247311
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9382.20.2994.12670

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTMAD1.92051065511797.670.218590.216960.216960.23347RANDOM21.308
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.70.340.910.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg13.372
r_scangle_it2.524
r_dihedral_angle_1_deg2.511
r_scbond_it1.56
r_angle_refined_deg1.126
r_mcangle_it0.841
r_mcbond_it0.448
r_nbd_refined0.247
r_symmetry_vdw_refined0.175
r_symmetry_hbond_refined0.162
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg13.372
r_scangle_it2.524
r_dihedral_angle_1_deg2.511
r_scbond_it1.56
r_angle_refined_deg1.126
r_mcangle_it0.841
r_mcbond_it0.448
r_nbd_refined0.247
r_symmetry_vdw_refined0.175
r_symmetry_hbond_refined0.162
r_xyhbond_nbd_refined0.138
r_chiral_restr0.081
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4346
Nucleic Acid Atoms
Solvent Atoms442
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSrefinement
DENZOdata reduction
CNSphasing