1MKZ

Crystal structure of MoaB protein at 1.6 A resolution.


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.346.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.169α = 90
b = 69.169β = 90
c = 126.184γ = 120
Symmetry
Space GroupP 3 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCUSTOM-MADEMMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BMAPS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6129.142215

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.6129.142215224894.810.184610.182840.21871RANDOM14.768
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.04-0.02-0.040.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.285
r_scangle_it3.641
r_scbond_it2.595
r_angle_refined_deg1.885
r_mcangle_it1.487
r_mcbond_it0.886
r_angle_other_deg0.856
r_symmetry_vdw_other0.329
r_symmetry_hbond_refined0.278
r_nbd_other0.266
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.285
r_scangle_it3.641
r_scbond_it2.595
r_angle_refined_deg1.885
r_mcangle_it1.487
r_mcbond_it0.886
r_angle_other_deg0.856
r_symmetry_vdw_other0.329
r_symmetry_hbond_refined0.278
r_nbd_other0.266
r_nbd_refined0.24
r_symmetry_vdw_refined0.198
r_xyhbond_nbd_refined0.171
r_chiral_restr0.107
r_nbtor_other0.091
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.001
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2679
Nucleic Acid Atoms
Solvent Atoms247
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
CNSrefinement
WARPmodel building
d*TREKdata scaling
d*TREKdata reduction
HKL-2000data scaling
CNSphasing
ARP/wARPmodel building