1M3A

Solution structure of a circular form of the truncated N-terminal SH3 domain from oncogene protein c-Crk.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D TOCSY1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN390% H2O/10% D2O100 mM NaCl7.2ambient307
22D NOESY1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN390% H2O/10% D2O100 mM NaCl7.2ambient307
3DQF-COSY1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN390% H2O/10% D2O100 mM NaCl7.2ambient307
42D HSQC1mM SH3 U-15N, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN390% H2O/10% D2O100 mM NaCl7.2ambient307
52D TOCSY1mM SH3 U-15N, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN390% H2O/10% D2O100 mM NaCl7.2ambient307
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX500
2BrukerDMX600
3BrukerDRX600
NMR Refinement
MethodDetailsSoftware
Simulated annealing combined with torsion angle dynamicsThe structures are based on 1090 restraints, 993 are NOE-derived distance contraints, 25 dihedral angle constraints, and 72 distance restraints from hydrogen bonds. Structures were calculated using program DYANA. No further refinement was performed.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest target function
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest target function)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2D homonuclear techniques combined with 2D 1H-15N HSQC data.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.6, 3.0Bruker
2data analysisXEASY1.3.1.3Bartels, Xia, Wuethrich
3structure solutionDYANA1.6Guentert
4refinementDYANAGuentert, Wuethrich