1M33

Crystal Structure of BioH at 1.7 A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.82931.3M tri Na Citrate, 0.1M Tris, 15% ethylene glycol, pH 8.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.448.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.21α = 90
b = 75.21β = 90
c = 49.256γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCUSTOM-MADEsagitally focusing monochromator, vertically focusing mirror2001-05-15MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.979464, 0.953732, 1.03321APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6310096.80.07516.53.43464633538
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.631.6982.50.5951.22828

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.774.543043527141142293.850.147350.145230.18838RANDOM15.249
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.15-0.150.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.565
r_dihedral_angle_1_deg6.629
r_scangle_it3.961
r_scbond_it2.65
r_angle_other_deg2.329
r_angle_refined_deg1.941
r_mcangle_it1.791
r_mcbond_it1.107
r_symmetry_vdw_refined0.3
r_symmetry_vdw_other0.293
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.565
r_dihedral_angle_1_deg6.629
r_scangle_it3.961
r_scbond_it2.65
r_angle_other_deg2.329
r_angle_refined_deg1.941
r_mcangle_it1.791
r_mcbond_it1.107
r_symmetry_vdw_refined0.3
r_symmetry_vdw_other0.293
r_nbd_refined0.286
r_nbd_other0.268
r_xyhbond_nbd_refined0.196
r_chiral_restr0.143
r_symmetry_hbond_refined0.142
r_nbtor_other0.098
r_bond_refined_d0.022
r_gen_planes_refined0.011
r_gen_planes_other0.009
r_bond_other_d0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1996
Nucleic Acid Atoms
Solvent Atoms238
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
dtDisplaydata collection
HKL-2000data reduction
CNSrefinement
d*TREKdata scaling
d*TREKdata reduction
DTDISPLAYdata reduction
HKL-2000data scaling
CNSphasing