1LVN
CRYSTAL STRUCTURE OF E. COLI AMINE OXIDASE COMPLEXED WITH TRANYLCYPROMINE
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | Sitting drop | 7.2 | 291 | 1.3M SODIUM CITRATE, 0.1M HEPES BUFFER, pH 7.2, INHIBITOR SOAKING SOLUTION 10:1 RATIO OF RACEMIC TRANYLCYPROMINE TO ENZYME MADE UP IN 1.4M SODIUM CITRATE, 0.1M HEPES BUFFER, PH 7.2. CRYSTAL SOAKED FOR 20 DAYS.CRYOPROTECTANT 20% GLYCEROL, 1.4M SODIUM CITRATE BUFFER, PH 7.2, pH 7.20, Sitting drop, temperature 291.0K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.76 | 0.55 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 135.236 | α = 90 |
b = 166.482 | β = 90 |
c = 79.628 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | MAR scanner 300 mm plate | 1996-10-20 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | SRS BEAMLINE PX9.6 | 0.87 | SRS | PX9.6 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.4 | 100 | 90.1 | 0.075 | 7.5 | 2.56 | 64108 | 64108 | 36.6 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
2.4 | 2.49 | 80.6 | 0.251 | 2.9 | 2.1 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||
X-RAY DIFFRACTION | FOURIER SYNTHESIS | FREE R | 1SPU | 2.4 | 20 | 70890 | 63358 | 2236 | 89.4 | 0.185 | 0.185 | 0.185 | 0.229 | BY COMPARISON TO A COMPLETE DUMMY REFLECTION SET TO 1.8 ANGSTROMS FOR THE CELL AND SPACE GROUP WITH THE REFLECTIONS RANDOMLY FLAGGED TO GIVE A MINIMUM OF 2000 REFLECTIONS IN THE TEST SET AT 2.6 ANGSTROMS. THIS GAVE A PERCENTAGE OF 3.6% OF REFLECTIONS, WHICH WAS THE OVERALL PERCENT VALUE IN THE TEST SET TO 1.8 ANGSTROMS. |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
0.921 | 8.229 | -9.15 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
c_scangle_it | 3.4 |
c_scbond_it | 2.326 |
c_mcangle_it | 2.025 |
c_angle_deg | 1.6 |
c_mcbond_it | 1.208 |
c_bond_d | 0.008 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 11319 |
Nucleic Acid Atoms | |
Solvent Atoms | 1447 |
Heterogen Atoms | 52 |
Software
Software | |
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Software Name | Purpose |
MOSFLM | data reduction |
ROTAVATA | data reduction |
CNS | refinement |
CCP4 | data scaling |
ROTAVATA | data scaling |
CNS | phasing |