1LDB

STRUCTURE DETERMINATION AND REFINEMENT OF BACILLUS STEAROTHERMOPHILUS LACTATE DEHYDROGENASE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.7955.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.9α = 90
b = 86.9β = 90
c = 357.3γ = 120
Symmetry
Space GroupP 61

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.860.286
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor29.4
p_staggered_tor19.9
p_planar_tor5.3
p_scangle_it3.14
p_mcangle_it2.03
p_scbond_it1.92
p_mcbond_it1.19
p_multtor_nbd0.305
p_xhyhbond_nbd0.25
p_singtor_nbd0.238
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor29.4
p_staggered_tor19.9
p_planar_tor5.3
p_scangle_it3.14
p_mcangle_it2.03
p_scbond_it1.92
p_mcbond_it1.19
p_multtor_nbd0.305
p_xhyhbond_nbd0.25
p_singtor_nbd0.238
p_chiral_restr0.191
p_planar_d0.059
p_angle_d0.052
p_plane_restr0.034
p_bond_d0.029
p_angle_deg
p_hb_or_metal_coord
p_xyhbond_nbd
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9108
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms10

Software

Software
Software NamePurpose
PROLSQrefinement