1L9L

GRANULYSIN FROM HUMAN CYTOLYTIC T LYMPHOCYTES


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72943.1-3.2 M AMMONIUM SULFATE, 0.05 M N-MORPHOLINO PROPANESULFONIC ACID TITRATED TO PH 7 WITH SODIUM HYDROXIDE, 2.5% ETHANOL., VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
1.5520.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 23.265α = 90
b = 60.436β = 90.99
c = 23.591γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4rPARABOLIC COLLIMATING MIR2002-02-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X8CNSLSX8C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.9223.682.30.03748.37.13566435664-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
0.920.9631.70.3043.83.71368

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADFREE R0.9223.59-33563333317181279.20.1380.1370.1898RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
13620.82727.7
RMS Deviations
KeyRefinement Restraint Deviation
s_non_zero_chiral_vol0.108
s_zero_chiral_vol0.083
s_anti_bump_dis_restr0.076
s_approx_iso_adps0.075
s_similar_adp_cmpnt0.052
s_angle_d0.038
s_from_restr_planes0.024
s_bond_d0.017
s_similar_dist0.014
s_rigid_bond_adp_cmpnt0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1331
Nucleic Acid Atoms
Solvent Atoms104
Heterogen Atoms33

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
MLPHAREphasing
DMmodel building
ARP/wARPmodel building
SHELXL-97refinement
DMphasing