1KP7
Conserved RNA Structure within the HCV IRES eIF3 Binding Site
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY, DQF-COSY, TOCSY, H-P HETCOR | 1.4 mM RNA, 10mM sodium phosphate buffer, 0.1mM EDTA | D2O or 90% H2O, 10% D2O | 10 mM sodium phosphate | 6 | ambient | 298 | |
2 | 3D C-edited NOESY, HCCH COSY, HCP, C-edited H-P HETCOR, C-edited TOCSY | 0.9 mM U-15N,13C RNA, 10mM sodium phosphate buffer, 0.1mM EDTA | D2O or 90% H2O, 10% D2O | 10 mM sodium phosphate | 6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | DRX | 500 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | energy-minimized average of 26 converged conformers with low energy and low restraint violations |
Conformers Calculated Total Number | 26 |
Conformers Submitted Total Number | 1 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.851 | Brunger, A.T. |
2 | refinement | X-PLOR | 3.851 | Brunger, A.T. |