1KIV

RECOMBINANT KRINGLE IV-10/M66 VARIANT OF HUMAN APOLIPOPROTEIN(A)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17pH 7.0
Crystal Properties
Matthews coefficientSolvent content
1.7630.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 24.61α = 90
b = 45.68β = 90
c = 63.7γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray130IMAGE PLATERIGAKU RAXIS IIMSC-YALE MIRRORS1997-10-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.123810.06210.72.53822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.25640.153

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT2.1913144670.17821.8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor25.2
p_staggered_tor20.6
p_planar_tor3.7
p_scangle_it2.954
p_scbond_it2.103
p_mcangle_it1.814
p_mcbond_it1.151
p_xyhbond_nbd0.32
p_multtor_nbd0.26
p_singtor_nbd0.18
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor25.2
p_staggered_tor20.6
p_planar_tor3.7
p_scangle_it2.954
p_scbond_it2.103
p_mcangle_it1.814
p_mcbond_it1.151
p_xyhbond_nbd0.32
p_multtor_nbd0.26
p_singtor_nbd0.18
p_chiral_restr0.125
p_planar_d0.043
p_angle_d0.032
p_plane_restr0.024
p_bond_d0.012
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms634
Nucleic Acid Atoms
Solvent Atoms67
Heterogen Atoms

Software

Software
Software NamePurpose
RIGAKUdata collection
RIGAKUdata reduction
PROFFTrefinement
R-AXISdata reduction
R-AXISdata scaling