1KC4

NMR Structural Analysis of the Complex Formed Between alpha-Bungarotoxin and the Principal alpha-Neurotoxin Binding Sequence on the alpha7 Subunit of a Neuronal Nicotinic Acetylcholine Receptor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP95% H2O/5% D2O5.5ambient308
22D TOCSY1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP95% H2O/5% D2O5.5ambient308
33D_15N-separated_NOESY1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP95% H2O/5% D2O5.5ambient308
43D_15N-separated_TOCSY1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP95% H2O/5% D2O5.5ambient308
52D 1H-15N HSQC1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP95% H2O/5% D2O5.5ambient308
6HNHA1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP95% H2O/5% D2O5.5ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE400
NMR Refinement
MethodDetailsSoftware
distance geometry dynamical simulated annealingRMS DEVIATIONS FROM IDEAL VALUES: BOND LENGTH(A) 0.0039, ANGLES(DEG) 0.61, IMPROPERS(DEG) 0.53XwinNMR
NMR Ensemble Information
Conformer Selection CriteriaThe submitted conformer models are the 10 with the lowest energy from a pool of over 100 accepted structures that had no restraint violations.
Conformers Calculated Total Number
Conformers Submitted Total Number10
Representative Model1 (determined by nmrclust 1.2)
Additional NMR Experimental Information
DetailsTHE WELL-DEFINED REGIONS IN THE COMPLEX, EXHIBITING EXTENSIVE LONG RANGE NOES, ARE: BGTX: 1-16, 22-28, 39-48, AND 54-68 ALPHA 7 19MER: 185-194
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.1
2processingNMRPipe1.8Delaglio, F., et al.
3data analysisSparky3.87Goddard, T.D. and Kneller, D.G.
4refinementCNS1.0Brunger, A.T., et al.