1KC4
NMR Structural Analysis of the Complex Formed Between alpha-Bungarotoxin and the Principal alpha-Neurotoxin Binding Sequence on the alpha7 Subunit of a Neuronal Nicotinic Acetylcholine Receptor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP | 95% H2O/5% D2O | 5.5 | ambient | 308 | ||
2 | 2D TOCSY | 1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP | 95% H2O/5% D2O | 5.5 | ambient | 308 | ||
3 | 3D_15N-separated_NOESY | 1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP | 95% H2O/5% D2O | 5.5 | ambient | 308 | ||
4 | 3D_15N-separated_TOCSY | 1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP | 95% H2O/5% D2O | 5.5 | ambient | 308 | ||
5 | 2D 1H-15N HSQC | 1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP | 95% H2O/5% D2O | 5.5 | ambient | 308 | ||
6 | HNHA | 1.6 mM alpha-bungarotoxin/[U-15N]-alpha 7 19mer complex 30 mM sodium phosphate, pH 5.5 50 micromolar sodium azide 50 micromolar TMSP | 95% H2O/5% D2O | 5.5 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 400 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry dynamical simulated annealing | RMS DEVIATIONS FROM IDEAL VALUES: BOND LENGTH(A) 0.0039, ANGLES(DEG) 0.61, IMPROPERS(DEG) 0.53 | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | The submitted conformer models are the 10 with the lowest energy from a pool of over 100 accepted structures that had no restraint violations. |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (determined by nmrclust 1.2) |
Additional NMR Experimental Information | |
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Details | THE WELL-DEFINED REGIONS IN THE COMPLEX, EXHIBITING EXTENSIVE LONG RANGE NOES, ARE: BGTX: 1-16, 22-28, 39-48, AND 54-68 ALPHA 7 19MER: 185-194 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.1 | |
2 | processing | NMRPipe | 1.8 | Delaglio, F., et al. |
3 | data analysis | Sparky | 3.87 | Goddard, T.D. and Kneller, D.G. |
4 | refinement | CNS | 1.0 | Brunger, A.T., et al. |