1K9H
NMR structure of DNA TGTGAGCGCTCACA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3.6 mM oligonucleotide, 55 mM potassium phosphate, 150 mM KCl, 0.1mM NaN3 | 99.96% D2O | 150 mM KCl | 7.4 | ambient | 298 | |
2 | 2D TOCSY | 3.6 mM oligonucleotide, 55 mM potassium phosphate, 150 mM KCl, 0.1mM NaN3 | 99.96% D2O | 150 mM KCl | 7.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | VXRS | 500 |
2 | Varian | VXRS | 600 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics, matrix relaxation, simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum,structures with the lowest energy |
Conformers Calculated Total Number | 2 |
Conformers Submitted Total Number | 1 |
Representative Model | (closest to the average) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | versions 3-5 | Kollman. P. |
2 | refinement | MORASS | 1.0 | Meadows. R.P. |