X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52980.1M HEPES pH7.5, 1.6M Na/K Phosphate, VAPOR DIFFUSION, HANGING DROP, temperature 298K (PROTEIN SOLUTION: 50mM MOPS pH 7 50mM KCL, 5mM MG CL2, 2 mM DTT, 40.2 MG/ML PROTEIN. WELL SOL 0.1 M NA HEPES pH 7.5, 0.8 M NA PHOSPHATE, 0.8 M K PHOSPHATE)
Crystal Properties
Matthews coefficientSolvent content
3.4364.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.01α = 90
b = 109.71β = 90
c = 134.38γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray115CCDMARRESEARCH2000-09-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.06APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.052099.60.06328.1434826888221
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.052.1698.60.3272.74

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE RPABB GROWN IN FORMATE, PDB ENTRY 1K0E2.051081089429086.20.17250.17260.2376RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
7227
RMS Deviations
KeyRefinement Restraint Deviation
s_similar_adp_cmpnt0.091
s_angle_d0.057
s_non_zero_chiral_vol0.038
s_anti_bump_dis_restr0.034
s_zero_chiral_vol0.027
s_from_restr_planes0.0226
s_bond_d0.021
s_similar_dist
s_rigid_bond_adp_cmpnt
s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6628
Nucleic Acid Atoms
Solvent Atoms560
Heterogen Atoms40

Software

Software
Software NamePurpose
SHELXL-97refinement
CNSrefinement
MAR345data collection
X-GENdata scaling
CNSphasing