1JUG

LYSOZYME FROM ECHIDNA MILK (TACHYGLOSSUS ACULEATUS)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.3pH 6.3
Crystal Properties
Matthews coefficientSolvent content
2.0542

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.12α = 90
b = 41.98β = 91.04
c = 38.09γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKUMIRRORS1994-09-19M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9900.0740.0774.38418-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.97820.1422

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT (EXCEPT LAST ROUND OF 4 CYCLES)PDB ENTRY 4LYZ1.9780388038852900.1690.170.1680.229RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23
p_staggered_tor22
p_scangle_it4.7
p_planar_tor3.6
p_scbond_it3.1
p_mcangle_it2.1
p_mcbond_it1.4
p_multtor_nbd0.25
p_xyhbond_nbd0.2
p_singtor_nbd0.19
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23
p_staggered_tor22
p_scangle_it4.7
p_planar_tor3.6
p_scbond_it3.1
p_mcangle_it2.1
p_mcbond_it1.4
p_multtor_nbd0.25
p_xyhbond_nbd0.2
p_singtor_nbd0.19
p_chiral_restr0.137
p_angle_d0.042
p_planar_d0.041
p_bond_d0.014
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1002
Nucleic Acid Atoms
Solvent Atoms65
Heterogen Atoms1

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
X-PLORmodel building
PROLSQrefinement
X-PLORrefinement
X-PLORphasing