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Solution structure of HIV-1Lai mutated SL1 hairpin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2mM RNA, 50mM phosphate buffer | 90% H2O/10% D2O | 100mM NaCl | 5.8 | ambient | 282 | |
2 | 2D NOESY | 2mM RNA, 50mM phosphate buffer | 100% D2O | 100mM NaCl | 5.8 | ambient | 300 | |
3 | DQF-COSY | 2mM RNA, 50mM phosphate buffer | 100% D2O | 100mM NaCl | 5.8 | ambient | 300 | |
4 | TOCSY | 2mM RNA, 50mM phosphate buffer | 100% D2O | 100mM NaCl | 5.8 | ambient | 300 | |
5 | 31P 1D | 2mM RNA, 50mM phosphate buffer | 100% D2O | 100mM NaCl | 5.8 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | UXNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry,structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 19 |
Conformers Submitted Total Number | 19 |
Representative Model | 19 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | UXNMR | ||
2 | processing | UXNMR | ||
3 | structure solution | X-PLOR | 3.851 | |
4 | iterative matrix relaxation | RELAZ | 1.0 | Lancelot, G. |
5 | refinement | X-PLOR | 3.851 |