Experiment: 1JQY

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5		PEG 3000, NaCl, Tris HCl, pH 6.5, VAPOR DIFFUSION, SITTING DROP

Crystal Properties
Matthews coefficient	Solvent content
2.26	45.68

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 64.99	α = 90
b = 166.006	β = 92.13
c = 74.42	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	CUSTOM-MADE		1999-12-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	1.0332	APS	19-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.14	82	97.3	0.05	24	4.6	84223	84223			34

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.14	2.22	83.3		0.205	5.5	4	7200

Refinement

Statistics
Diffraction ID	Structure Solution Method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION		2.14	25	84172	84172	4235		0.211	0.284

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
p_staggered_tor	18.01
p_orthonormal_tor	14.79
p_planar_tor	4.357
p_scangle_it	4.14
p_mcangle_it	3.874
p_scbond_it	2.902
p_mcbond_it	2.58
p_xhyhbond_nbd	0.304
p_multtor_nbd	0.254
p_singtor_nbd	0.202

RMS Deviations
Key	Refinement Restraint Deviation
p_staggered_tor	18.01
p_orthonormal_tor	14.79
p_planar_tor	4.357
p_scangle_it	4.14
p_mcangle_it	3.874
p_scbond_it	2.902
p_mcbond_it	2.58
p_xhyhbond_nbd	0.304
p_multtor_nbd	0.254
p_singtor_nbd	0.202
p_xyhbond_nbd	0.187
p_chiral_restr	0.141
p_planar_d	0.045
p_angle_d	0.042
p_bond_d	0.015
p_plane_restr	0.012

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	12360
Nucleic Acid Atoms
Solvent Atoms	1082
Heterogen Atoms	462

Software

Software
Software Name	Purpose
d*TREK	data scaling
SCALEPACK	data scaling
TRUNCATE	data reduction
AMoRE	phasing
REFMAC	refinement
d*TREK	data reduction
CCP4	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.