1J3S
Solution Structure of Reduced Recombinant Human Cytochrome c
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2mM Cytochrome c; 25mM phosphate buffer | 90% H2O/10% D2O | 125 | 6.5 | ambient | 300 | |
2 | 2D TOCSY | 2mM Cytochrome c; 25mM phosphate buffer | 90% H2O/10% D2O | 125 | 6.5 | ambient | 300 | |
3 | DQF-COSY | 2mM Cytochrome c; 25mM phosphate buffer | 90% H2O/10% D2O | 125 | 6.5 | ambient | 300 | |
4 | 2D NOESY | 2mM Cytochrome c; 25mM phosphate buffer | 100% D2O | 125 | 6.5 | ambient | 300 | |
5 | 2D TOCSY | 2mM Cytochrome c; 25mM phosphate buffer | 100% D2O | 125 | 6.5 | ambient | 300 | |
6 | 3D_15N-separated_NOESY | 2mM Cytochrome c U-15N; 25mM phosphate buffer | 90% H2O/10% D2O | 125 | 6.5 | ambient | 300 | |
7 | 3D_15N-separated_NOESY | 2mM Cytochrome c U-15N; 25mM phosphate buffer | 100% D2O | 125 | 6.5 | ambient | 300 | |
8 | HNCBCA, CBCA(CO)NH, HBHA(CBCA)NH, HBHA(CBCACO)NH, HNHA | 2mM Cytochrome c U-15N, 13C; 25mM phosphate buffer | 90% H2O/10% D2O | 125 | 6.5 | ambient | 300 | |
9 | 3D_13C-separated_NOESY | 2mM Cytochrome c U-15N, 13C; 25mM phosphate buffer | 100% D2O | 125 | 6.5 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
Hybrid distance geometry-dynamical simulated annealing method | The structures are based on a total of 1562 restraints, 1449 are NOE-derived distance constraints, 80 dihedral angle restraints,33 distance restraints from hydrogen bonds. | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with acceptable covalent geometry |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.85 | Brunger |
2 | data analysis | AURELIA | 2.5.9 | Neidig |
3 | processing | XwinNMR | 2.6 | Bruker |