1J2J

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG3350, KI, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1341.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.41α = 90
b = 61.894β = 90
c = 76.874γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-18B1.0Photon FactoryBL-18B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63096.40.048113062630625
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6983.10.2453

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1J2I1.624.852908015451000.199880.199880.198480.22701RANDOM16.791
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.190.12-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.109
r_scangle_it4.283
r_dihedral_angle_1_deg4.036
r_scbond_it2.571
r_mcangle_it1.612
r_angle_refined_deg1.559
r_mcbond_it0.871
r_nbd_refined0.213
r_symmetry_hbond_refined0.188
r_symmetry_vdw_refined0.184
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.109
r_scangle_it4.283
r_dihedral_angle_1_deg4.036
r_scbond_it2.571
r_mcangle_it1.612
r_angle_refined_deg1.559
r_mcbond_it0.871
r_nbd_refined0.213
r_symmetry_hbond_refined0.188
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.147
r_chiral_restr0.108
r_bond_refined_d0.012
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1661
Nucleic Acid Atoms
Solvent Atoms278
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SOLVEphasing
RESOLVEphasing