1I4V
SOLUTION STRUCTURE OF THE UMUD' HOMODIMER
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | HNHA | 0.9 mM UmuD' U-15N; 150 mM NaCl, 10 mM phosphate, pH 6.0, 1mM DTT, 0.1 mM EDTA | 95% H2O/5% D2O | 150 mM NaCl | 6.0 | ambient | 303 | |
2 | 3D_15N-separated_NOESY | 0.9 mM UmuD' U-15N; 150 mM NaCl, 10 mM phosphate, pH 6.0, 1mM DTT, 0.1 mM EDTA | 95% H2O/5% D2O | 150 mM NaCl | 6.0 | ambient | 303 | |
3 | 2D_NOESY | 1.5 mM UmuD' unlabeled; 150 mM NaCl, 20 mM phosphate, pH 6.0, 1 mM DTT, 0.1 mM EDTA | 95% H20, 5% D2O | 150 mM NaCl | 6.0 | ambient | 303 | |
4 | 2D_NOESY | 1.4 mM UmuD' unlabeled; 150 mM NaCl, 20 mM phosphate, pH 6.0, 1 mM DTT, 0.1 mM EDTA | 100% D2O | 150 mM NaCl | 6.0 | ambient | 303 | |
5 | 3D_13C-separated_NOESY | 1.3 mM UmuD' U-15N,13C; 150 mM NaCl, 20 mM phosphate, pH 6.0, 1 mM DTT, 0.1 mM EDTA | 95% H2O/5% D2O | 150 mM NaCl | 6.0 | ambient | 303 | |
6 | 3D_15N-separated_NOESY | 2.7 mM UmuD' U-100% 2H,15N and 2.7 mM unlabeled UmuD'; 150 mM NaCl, 20 mM phosphate, pH 6.0, 1 mM DTT, 0.1 mM EDTA | 95% H20, 5% D2O | 150 mM NaCl | 6.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 750 |
2 | Varian | UNITYPLUS | 400 |
3 | Bruker | AMX | 600 |
4 | Bruker | AMX | 500 |
5 | Varian | VXR | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 97.0 | Molecular Simulations Inc. |
2 | data analysis | XEASY | 1.3.9 | Bartels et al |
3 | refinement | X-PLOR | 3.851 | Brunger |