1GWM

Carbohydrate binding module family29 complexed with glucohexaose


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.520% PEG3350, 200MM LI2SO4, 10MM CELLOHEXAOSE, 25% GLYCEROL, pH 7.50
Crystal Properties
Matthews coefficientSolvent content
2.653

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.707α = 90
b = 42.858β = 105.4
c = 35.555γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.152083.90.03133.73.637735
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.151.1728.10.073101.78

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTNATIVE CBM29 SOLVED BY MAD1.152044347235284.10.1290.1280.156RANDOM11.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.08-0.20.07-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.823
r_scangle_it3.982
r_angle_other_deg3.613
r_mcangle_it3.128
r_scbond_it2.892
r_mcbond_it2.131
r_angle_refined_deg1.966
r_nbd_refined0.641
r_nbd_other0.371
r_symmetry_vdw_other0.369
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.823
r_scangle_it3.982
r_angle_other_deg3.613
r_mcangle_it3.128
r_scbond_it2.892
r_mcbond_it2.131
r_angle_refined_deg1.966
r_nbd_refined0.641
r_nbd_other0.371
r_symmetry_vdw_other0.369
r_xyhbond_nbd_refined0.28
r_chiral_restr0.255
r_symmetry_vdw_refined0.2
r_nbtor_other0.141
r_symmetry_hbond_refined0.123
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_bond_other_d0.004
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1219
Nucleic Acid Atoms
Solvent Atoms207
Heterogen Atoms100

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing