1GU0

CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM STREPTOMYCES COELICOLOR


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.5PEG 8000, SODIUM/POTASSIUM PHOSPHATE, TRIS BUFFER, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
2.856.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.2α = 90
b = 138.4β = 90
c = 141.2γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 41998-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.87594.40.0574429534
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8293.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2DHQ22467681214766.90.2040.20.242RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it3.549
r_scbond_it2.411
r_angle_other_deg2.056
r_mcangle_it1.921
r_mcbond_it1.178
r_dihedral_angle_3_deg0.953
r_symmetry_vdw_refined0.38
r_symmetry_hbond_refined0.341
r_xyhbond_nbd_refined0.265
r_nbd_refined0.236
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it3.549
r_scbond_it2.411
r_angle_other_deg2.056
r_mcangle_it1.921
r_mcbond_it1.178
r_dihedral_angle_3_deg0.953
r_symmetry_vdw_refined0.38
r_symmetry_hbond_refined0.341
r_xyhbond_nbd_refined0.265
r_nbd_refined0.236
r_symmetry_vdw_other0.23
r_nbd_other0.223
r_xyhbond_nbd_other0.157
r_chiral_restr0.118
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_gen_planes_other0.004
r_bond_other_d0.001
r_angle_refined_deg
r_dihedral_angle_1_deg
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_nbtor_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13327
Nucleic Acid Atoms
Solvent Atoms1740
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing