1F4S
STRUCTURE OF TRANSCRIPTIONAL FACTOR ALCR IN COMPLEX WITH A TARGET DNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1 mM AlcR U-15N, 1.1 mM double stranded DNA | 20 mM phosphate buffer; 90%H2O, 10%D2O; pH 5.9 | 5.9 | 1 atm | 293 | ||
2 | 3D_15N-separated_NOESY | 1 mM AlcR U-15N, 1.1 mM double stranded DNA | 20 mM phosphate buffer; 90%H2O, 10%D2O; pH 5.9 | 5.9 | 1 atm | 293 | ||
3 | HNHA | 1 mM AlcR U-15N, 1.1 mM double stranded DNA | 20 mM phosphate buffer; 90%H2O, 10%D2O; pH 5.9 | 5.9 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing | 1142 noe-derived constraints, 76 h-bond constraints, 33 phi angle restraints, 118 loose angle restraints on the DNA backbone | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | The submitted conformer models are the 10 structures with the lowest energy. |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | 2.1 | |
2 | processing | Gifa | 4 | Delsuc, M.A. |
3 | structure solution | DIANA | Gntert | |
4 | refinement | X-PLOR | 3.1 | Brunger |