1F3Y
SOLUTION STRUCTURE OF THE NUDIX ENZYME DIADENOSINE TETRAPHOSPHATE HYDROLASE FROM LUPINUS ANGUSTIFOLIUS L.
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | CBCANH,CBCA(CO)NH,C(CO)NH_TOCSY,HNCO,(HCA)CO(CA)NH | 0.9mM U-15N, 13C; Hydrolase 50mM phosphate buffer, 1.5mM EDTA, 3mM DTT | 90% H2O/10% D2O | 50mM | 6.5 | ambient | 298 | |
2 | HCACO,HCCH-TOCSY,13C-NOESY-HSQC,(HB)CB(CGCD)HD,(HB)CB(CGCDCE)HE,HACAHB,13C_CT_HEQC, | 0.9mM U-15N,13C; Hydrolase 50mM phosphate buffer, 1.3mM EDTA, 1.5mM EDTA,3mM DTT | 100% D2O | 50mM | 6.5 | ambient | 298 | |
3 | HNHB,HNHA,15N-TOCSY-HSQC,15N-NOESY-HSQC,15N-IPAP-HSQC | 1.2mM U-15N; Hydrolase 50mM phosphate buffer, 1.5mM EDTA, 3mM DTT | 90% H2O/10% D2O | 50mM | 6.5 | ambient | 298 | |
4 | 15N-NOESY-HSQC | 1.2mM U-15N; Hydrolase 20mM imidazole buffer, 20mM MGCl2 | 90% H2O/10% D2O | 40mM | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 600 |
4 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics,simulated annealing | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with favorable non-bond energy,structures with the least restraint violations,target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 25 |
Representative Model | 3 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1.7 | Delaglio |
2 | data analysis | XEASY | 1.3.13 | Bartels |
3 | refinement | DYANA | 1.5,1.4 | Guentert |
4 | refinement | CNS | 0.9 | Brunger |
5 | collection | VNMR | 6.1 b | Varian |